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I - along with almost the entire Beverly Hills Community - want the alignment to conform to the route that Metro has been proposing for the longest time, which would mean a station along Santa Monica Blvd.
Insertion of the simulated data ahead of the FGB-int7 sequences should drive the alignment to conform more closely to the original mt tree.
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Boundaries of GH18 domains were obtained from the multiple sequence alignment by editing multiple alignments to conform to the GH 18 domain of human chitotriosidase (CHIT1), for which the 3D structure is available [PDB: 1HKK].
Two recent studies support the latter hypothesis by showing that different alignment reconstruction methods often result in different topologies [19] and that trees reconstructed from longer alignments are more likely to conform to the species tree [5].
DNA polymerase, penton base (β-determinant), pVII, protein V, L1 and L2 of the hexon, and fiber knob (γ-determinant) nucleotide sequences were compared by sequential pairwise alignment with the Clustal Algorithm implemented in the BioEdit software package (version 6.0.5) and adjusted manually to conform to the optimized alignment of deduced amino acid sequences.
Briefly, fungal DJ-1 and Hsp31 protein sequences were aligned using the Clustal W program implemented in MEGA5.0 [ 86] and adjusted manually to conform to the optimized alignment of amino acid sequences.
Obviously, I'm eager to conform with any Voter-Thought-Alignment Guidelines you or Father Trump institute.
To conform to cytochrome P450 classification conventions, only alignments sharing ≥ 40% amino acid identity were used to annotate these unigenes.
Molecular replacement trial models were constructed based on the main chain of the BRCT repeat from 1JNX with side chains mutated to conform to the BARD1 sequence based on the structural alignment.
The final phylogenetic tree was constructed using SEMPHY, constraining the topology to conform to SEMPHY trees built from the sub-alignments.
It refused to conform to clothing stereotypes.
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