The phrase "alignment to compensate for" is correct and usable in written English.
It can be used when discussing adjustments or modifications made to address or counteract a specific issue or discrepancy.
Example: "We need to ensure proper alignment to compensate for any discrepancies in the data."
Alternatives: "adjustment to counteract" or "alignment to offset".
However, several hundreds of sections or even more have to be cut without any loss of sections, inspected and photographed with the TEM, resulting in an enormous data volume, which is followed by a complex elastic alignment to compensate inevitable image distortions using an elastic alignment program (for example, TrakEM2 [ 4, 5]).
Sub-tomogram averaging of volumes containing injectisomes from tomograms of Y. enterocolitica minicells and focal pair tomograms (Kudryashev et al., 2012b) of wild type, regularly sized cells were performed using a customized local feature alignment strategy to compensate for structural variations among individual injectisomes.
To develop a real-time alignment monitoring system (RAMS) to compensate for the limitations of the conventional room-laser-based alignment system.
A time alignment algorithm was used to compensate for differences in utterance lengths and misalignments between phonemes.
If necessary (e.g. for large cells in axial direction) the alignment parameters were manually adjusted to compensate for the larger distance from the coverslip.
In order to compensate for the alignment accuracy of +/-10 μm of the bonder machine, the CNT bumps on the metallization lines were deliberately fabricated to be rectangular.
The most difficult part might've been adjusting the alignment of the various stacked captures to compensate for stellar motion, which is the motion of stars across the night sky, and why you see star trails in unedited long exposure nighttime photography.
We removed the gaps involved in the conversion regions of both paralogs to compensate for multiple-sequence alignment effects thereby improving the length estimate for the conversion regions.
To compensate for deviations in alignment of the histological slides, relative values were used by dividing the length for epithelial downgrowth by the total tooth length.
