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As the contigs for each subspecies in the same component are with slight differences, a consensus contig can be found by multiple alignment (to capture the variations of the genome of the subspecies) to represent the genome of the species.
The region containing EBER2 was not calculated to have a favorable z-score; however, this is most likely due to the inability of the primary sequence alignment to capture the conservation of structure for this RNA.
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Both offer auto-alignment to capture the images.
The automated software was used to centre the horizontal alignment prior to capture.
MaWish and NetworkBlast which use only sequence similarity to carry out network alignment manage to capture <50% of the complex.
In order to achieve this posture alignment, one would have to capture the complete movement (6 DoF: 3 orientations and 3 translations) of the heads and hands of both trainer and trainee.
Profile HMMs are an alternative to BLAST and are statistical models of multiple sequence alignments with the ability to capture position-specific information.
Throughout the study described in the paper, we have used a simple global alignment score that might fail to capture a variety of features that represent patterns of conservation such as locally clustered functional regions.
With a bit of planning (and luck) I was able to capture perfect shadow alignment along the avenues—I had only one chance to capture they were shifting fast".
Additionally, current technologies examine collagen alignment in isolation, and thus fail to capture the relationship between changing structure and cellular organization.
Alignment to the transcriptome allows us to capture junction-spanning reads and to apply appropriate length adjustments.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com