Sentence examples for alignment to a sequence from inspiring English sources

In cases of single pair matches, a merge was performed if the alignment to a sequence contig indicated an overlap.

When the analyzed 3D structures correspond to remote homologs, mapping the 3D alignment to a sequence alignment is often tricky since a small inaccuracy in the 3D structure superimposition can lead to the assignment of a residue of a sequence with the neighbor of the true corresponding residue in the other sequence.

If two sequences participated in a pairwise alignment above a pre-selected threshold quality, they were put into a "bin"; additional sequences were added to the bin if they had a sufficient pairwise alignment to a sequence already in the bin.

Slider is an application for the Illumina Sequence Analyzer output that uses the probability files instead of the sequence files as an input for alignment to a reference sequence or a set of reference sequences.

The InSites algorithm compares sequences in an alignment to a reference sequence and shows each phylogenetically informative site, defined as a site at which more than one sequence differs from the reference sequence.

Long subsequences were selected from across each full sequence that could seed alignment to a target sequence with any degree of overlap.

This technique allows the production of extremely long (hundreds of kbp) restriction maps, which to date has been applied to, e.g., alignment to a reference sequence to identify structural variations in bacteria [ 19– 22] and in humans [ 23– 25].

Algorithms are classified by whether they use an alignment to a reference genome sequence, or whether they assemble the reads into full transcripts de novo by identifying overlapping reads.

To be considered a match, array query sequences were required to have >50% sequence alignment to a model RefSeq transcript hit and >98% identity for the aligned sequence.

Here we present a draft bighorn sheep WGS created by cross-species alignment to a domestic sheep reference sequence.

QRNA predictions were filtered by alignment to a variety of coding sequence databases using BLAT [ 40] with a default score cutoff of 30 ([alignment length] – [number of mismatches]) and a minimum sequence identity of 60% (-minIdentity = 60).