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In this case, with the same evolutional distance and console length, the accuracy and confidence values of the global alignment are somewhat higher than those of the local alignment, this difference increasing with the growth of the evolutional distance.
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These distances are all computed after sequence alignment, the difference between them being the way the alignments are scored, they are thus expected to give similar results.
The main reason for this difference is the alignments used in the two studies.
Similarly, more conservative LSU rDNA revealed 7% (2,195 pairwise alignment length) difference between the two sequences.
Using the YASS software, we only kept duplicates with an alignment length difference of less than 8%.
First, we assume that the alignment difference between the source and the target dictionaries causes this effect.
The other examples show some other cases in which the alignment makes the difference between the hypotheses.
However, despite these departures, Deleuze maintains a crucial alignment with Kant; Difference and Repetition is still a transcendental approach.
The final de novo assembly was constructed using a minimum overlap length of 45 nt, minimum overlap identity of 96%, and an alignment difference score of −6.
All obtained motifs were compared to each other by applying the minaligndiff function of the TAMO distribution and when motifs occur with an alignment difference < 0.2, only the motif with the highest Bit score is further considered.
We found subtle changes in the resulting assemblies, and ultimately decided to use a minimum overlap length of 45 nt, alignment difference score of −6, and a minimum overlap identity of 96%.
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