Sentence examples for alignment the software from inspiring English sources

After the alignment, the software uses the GI number of the best hit to query Genbank [ 16] for gene specific information including protein domains.

This nucleotide alignment was then used to generate a codon alignment using the software available at the HCV server (http://hcv.lanl.gov/).

The July 2007 Mus musculus genome assembly (NCBI37/mm9) from NCBI was used for the sequence alignment by the software Bowtie (0.12.7) [ 53].

The July 2007 Mus musculus genome assembly (NCBI37/mm9) from NCBI was used for the sequence alignment by the software Bowtie (0.12.7) (Langmead, 2010).

We obtained coding sequence alignments corresponding to the already generated protein sequence alignments using the software pal2nal (Suyama et al. 2006).

We then conducted a global multiple-alignment using the software MUSCLE.

However, secondary structure alignments with the software SSEA 38 showed a similarity to alpha/beta sandwiches (z-score 2.28; normalized score of 54.5).

Sequences were aligned using translational alignment available in the software package Geneious 4·8·5 (alignment available upon request).

We evaluated the performance of VariantMetaCaller over two different pipeline sets based on the choice of the alignment software, the four variant calling methods were run on either the BWA or Bowtie 2 aligned reads.

After the alignment, we ran the software SAMtools [ 17] to convert the alignment files to a sorted, indexed binary alignment map (BAM) format.

For these tasks as well as for sequence alignments the following software packages were used – ChromasPro (Technelysium Pty Ltd, South Brisbane QLD 4101, Australia), mtDNACommunity31, and BioEdit87.