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After a phase of alignment, the resulting unambiguous ACF is obtained as follows: R Unamb τ = R Amb τ - a ̂ R NCPACF τ cos θ ̂, (17).
After classification and alignment, the resulting averaged tomograms are very similar to the original density maps.
After alignment the resulting dissimilarity score matrix for subtomogram classification is significantly improved in comparison to the dissimilarity score matrix generated from the initial starting structures).
After alignment, the resulting sets of interaction pairs (each consisting of one original Arabidopsis interaction pair and the ortholog pairs obtained for various other species) were used as input for the correlated mutation analysis if at least 30 pairs were present.
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We performed DNA sequence alignments from the resulting protein alignments using a custom Perl script.
Once aligned, a matrix is created that reports the frequency of each nucleotide (A, C, G, and T) at each position of the alignment - the resulting matrix is called a position frequency matrix (PFM).
The output is an alignment of the resulting tip sequences.
The alignment of the resulting sequences with Hel1-333 ishownwn in Figure 6C.
Judgment and experience have the strongest influence on the choice of the best alignment, an alignment resulting in the least amount of earthworks in constructing a road, the characteristics of which have been previously decided.
Multiple sequence alignments were generated by concatenating the resulting alignment columns of 10 individually simulated sites.
After the alignment, the result of the SAM format file was converted to bam format using SAMtools51.
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