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Reflecting this alignment, the position of 262 transcripts in the porcine physical map was assigned to the corresponding eQTL position in the genetic linkage maps.
To bring cells into the standard vertical alignment, the position of the apex of the tip and the angle of the local hyphal axis at the tip were determined visually using ImageJ.
The set of features that shows the most correlation to the performance consists of the relative entropy of the binding site alignment, the position distribution of the binding sites in the sequences, and the length of the single sequence in the dataset.
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From each protein family of size n, all (n- n)/2 pairwise alignments were extracted from the global family alignment, maintaining the position and length of all gaps.
Additionally, the number of sequences in the alignment at the position of interest was also considered.
Where a gap was found at that position in any of the three alignment sequences, the position was ignored.
The position of the potential mutation in the reference genome was extracted from the alignment and the position of the mutation in the k-mer.
In Materials and methods, a right column, line 14, what does 'the position p' mean, which is described as in "the alignment for the position p"?
In the sequence alignments, the positions of three T. thermophila introns lay within 2 amino acids of introns in N. ovalis [see Additional file 1].
The alignment was optimized manually using BioEdit [ 39], using information from pairwise alignments and the position of functionally significant amino acids (Additional file 13).
There was one deRIP error in the sub-alignment at alignment position 1940-1.
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