Sentence examples for alignment the number of from inspiring English sources

Using the alignment, the number of reads that aligned to each gene for each sample separately, were counted (in-house script), and used to produce the counts matrix.

The important factors affecting the magnitude and frequency components of the shaft voltage generated, because of magnetic dissymmetry depend on the machine size, the stator core construction, the rotor alignment, the number of poles, the generator design, and load conditions.

After alignment, the number of sequences examined per wound sample was equilibrized to 300 sequences by sampling randomly without replacement to facilitate subsequent taxa abundance analyses.

For each alignment a percent identity score was calculated to determine the best match in the following way: excluding end gaps, ambiguous states (Ns) in the 454 sequence, and gaps introduced in the reference sequence during alignment the number of mismatches was calculated.

In terms of multiple sequence alignment, the number of bits used in the 1UN notation is correlated to the maximum length of the input sequences.

It appears that after BAR+ alignment, the number of annotation terms inherited by the sequences in a validated manner surpasses the same features described in Table 1.

Initially, we estimated using the EST-to-mRNA and (method-specific) mRNA-to-genomic alignments the number of introns expected in the EST-to-genomic alignments.

The objective function is specifically tuned to finding SV events by taking into account the length and quality of alignments, the number of alignments in the OCS and the genomic distance between those alignments.

Although 760 or less false positives were expected in the 2.4 Gb AT-exclusive alignments, which was as large as the human-chimpanzee genome alignments, the number of false positives in the human-chimpanzee genome alignments may have been much lower than 760 since the AT blocks constitute small fractions of the genome.

For clusters containing out-paralogs, each clade (out-paralogous group) was separated into a new individual alignment increasing the number of the alignments to 353.

To investigate in more detail the factors affecting the performance of each program, we characterized each alignment using a number of 'global' attributes describing the overall full-length alignment, including the number of sequences to be aligned, their length, an MSA objective function (norMD) [40] and the percentage of the alignment covered by the blocks.