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Building on the concept of constructive alignment, the initial pool of 12 items focused on the alignment of learning outcomes, teaching and learning activities as well as the assessment implemented within the tertiary engineering curriculum.
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A comparison between the reference alignment and the initial sequence alignment showed that the helix 7 of the latter was shifted by three residues toward the C-terminus (Fig. 3).
Alignment of the initial physical map with the draft sequence assemblies identified BAC contigs that potentially linked sequence SC (Figure 1).
Our procedure uses anatomy-based alignment as the initial condition.
Photographs were taken of each sample showing the plate and the end of the screws, in order to document plate alignment and the initial 1 cm gap.
The segment (35%) at the top of group F had a dense contiguous alignment spanning the initial 28% of Mt-2.
Compared with other aligners, ELAND is very efficient; however, Eland can map reads using up to the first 32 bases; for longer sequences the bases after 32 willbe mapped sequentially after the alignment of the initial 32.
First, we looked for alignment of the initial Methionine (Met) amino acid to a downstream Met in multiple proteins, which may point to the less common initial Met being an incorrect translation start position.
A subset of alignments was identified by extracting only unique alignment start positions and 16-nucleotide sequence prefixes, discarding alignments where the initial part of the read was masked (i.e. having 'H' as the first element of the field).
Indel and dCAPS markers were designed based on the existing sequence alignment of Nipponbare and 93 11, as well as sequence alignments of the initial 62-kb candidate region for dep in Koshihikari and O. glaberrima.
Bootstrap values were calculated using PhyML 3.0 (http://www.atgx-montpellier.fr/phyml/) the RAxML-generated trees with their corresponding multiple alignments as the initial input [65].
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