Sentence examples for alignment the frequency from inspiring English sources

Allele frequency bias: In comparison to mapping with global alignment, the frequency of the reference allele was on average 3% higher when a local alignment was used.

If invariant and variant sites distributed randomly in the original alignment, the frequency of invariant sequences in the permuted alignments would show similar frequency to the original alignment because of the randomness at the start point.

However, despite the reported improvements in BSS performance, additional complexity was introduced due to the extra stage for the alignment of the frequency bin-wise permuted clustering results.

However, for the 3-user scenario under consideration, closed-form and computationally efficient solutions do exist for spatial interference alignment in the frequency domain but not in the time domain [1].

For each di- or trinucleotide at a given position in the consensus sequence of an alignment, the mutation frequency was computed as the number of sequence fragments with a transition mutation at that position divided by the total number of aligned sequences.

Correcting for these gapped regions in the alignment shows that the frequency of recombination largely reflects only the number of homologous sequences (or gaps) at that position.

A sequence logo was generated at the bottom of the alignment to show the frequency of certain amino acid substitution at a position, indicated by the height of the letter [ 66 ].

Table 3 shows the alignment frequency between templates and the query from the 48 unbound dataset after Homology Indexing is used.

In order to observe the alignment across frequency bins, the permutation measurement (PM) for a 2×2 case is adopted[28].

Table 4 shows the alignment frequency between templates and the query from 20 dataset of no appropriate homologous templates after Chain Length Indexing is used.

Using this alignment, we can estimate the frequency, f pi, of each nucleotide i in each position of aligned sequences, p, which is the element of the PFM.