Sentence examples for alignment the exact from inspiring English sources

Within region B, the same motifs were conserved in all six species, but, in agreement with the gapping noted in the TCOFFEE alignment, the exact positioning of the motifs relative to the start site was different in the rodent and dog sequences compared to the primates.

As the first genomic contigs that entered OrthoMCL were those of strain 1,141,733, the alignment followed the exact gene order in the contigs of this strain.

To compare gene structure among species, exon sequences were mapped onto the nt alignment and the exact position and phase of each intron was verified by manual inspection.

This computation was based on concatenated alignments of the exact same 40 reference genes as used by MLTreeMap.

Indeed, some motifs (as we have seen for TATA-boxes) might show enrichment in orthologous promoter sets when analyzed independently but fail to show higher conservation scores in multiple sequence alignments because the exact location of the binding site can shift during evolution [ 62].

The ultramicro inversions are also distinguished from larger microscopic inversions that are detectable as a single alignment or a string of local alignments, in that the exact boundaries of ultramicro inversions can be identified easily within the local alignment.

The reduce function extends the exact alignment seeds into longer inexact alignments.

Thus, NBC (Rosen et al., 2011), RAIphy (Nalbantoglu et al., 2011) and PhyloPythiaS (Patil et al., 2011) rely on the alignment-free composition-based approaches (using k-mer frequencies or k-mer counts) and PAUDA (Huson and Xie, 2014) relies on the alignment-based approach and Kraken (Wood and Salzberg, 2014) on the exact alignment of k-mers.

Given a human gene, our approach examined whether it fell within an orthologous region defined by level 1 alignment data without knowledge of the exact position within an alignment or relative to a gap.

At the beginning of the paper (Section 3), some examples were given, where CC, MI8 and MI256 are unable to find the exact alignment.

The exact alignment of a series of tilted 2D images prior to the construction of the 3D image in a manner that avoids image distortion is also important for improving 3D information.