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Our approach to shorting is different in that the shorting decision is not decoupled from the computation of the alignment; the dynamic programming method considers shorted as well as non-shorted alignments.
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Echeverri, S. A., Morehouse, N. I., Zurek, D. B. & Holman, L. Control of signaling alignment during the dynamic courtship display of a jumping spider.
Results of this study show that two weeks of training can improve the dynamic alignment control of the lower extremities, as measured using the alignment angle of the coronal plane and the torsion angle of horizontal plane during a stop action.
The "position of no return," as reported by Ireland [18], is the dynamic alignment that may easily lead to ACL injury.
A segmental variant of the dynamic alignment algorithm is used to find in the phonetic output of an ASR transcript the substring of phonemes that best matches the proper name's phonetization.
Salsich et al. (2012) also suggested that the correction of the dynamic alignment of the lower limbs could be an important component in the rehabilitation of these patients.
One of the reasons for this success is that these patients exhibited abnormalities in the dynamic alignment of the patella and significantly reduced strength in the hip muscles (lateral rotators, abductors and extensors) [ 9, 11].
In order to identify the similarity of the nrESS, we implemented a pairwise alignment algorithm based on the Dynamic Programing Needleman and Wunsch (NW) algorithm as described in reference [ 46].
Foot posture also affects the mechanical alignment and dynamic function of the lower limb; therefore, foot posture may be related to the development of lower limb disorders [ 17].
The RefAligner scoring scheme does not currently have a parameter to favor overlapping alignments, e.g., to initialize the dynamic programming matrix with no penalties and take the maximum score of the final row or column in the matrix.
Gapped alignments were performed using a constrained, fail-fast, semiglobal implementation of the dynamic programming alignment algorithm (the Needleman-Wunsch algorithm (Needleman and Wunsch 1970), modified to not penalize initial gaps and to trace back from the highest-scoring terminal node of either sequence).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com