Sentence examples for alignment that have from inspiring English sources

Base pairs were predicted for those columns in an alignment that have similar patterns of variation, more commonly called covariation.

To compute Tajima's D, we considered only sites in the multiple sequence alignment that have unambiguously called bases from at least six strains.

This program identifies gene conversion events by detecting putative sequence fragments that appear to have been transferred from one paralog into another (i.e., fragments in a multisequence alignment that have higher sequence similarity to a homologous paralog fragment than would be expected based on the mean similarity levels across the entire gene).

When aligned across all taxa, these contigs yielded a 315 bp consensus alignment that had an average pairwise sequence similarity of 94.6%, with 282 sites (89.5%) identical across all taxa, and no stop codons or indels in any taxa.

After all, he put an end to an earlier alignment that had promised his party power with the New Labour government, as arranged by his predecessor, Paddy Ashdown.

The final nucleotide alignment was then derived from the corresponding translated amino acid alignment that had been adjusted manually.

These alignments are subsequently used to build multiple alignment blocks; each block contains the sequences for the isolates included in a pairwise alignment that had been created in the first step.

These ranges were established based on reported surgical precision for achieving targeted component alignment [ 10, 15, 16] and the magnitude of deviation from optimal alignment that has been associated with clinical and biomechanical complications [ 18, 20, 31- 34].

Based on a small proportion of MeSH to VCM alignment that had already been manually validated, three inter-alignment consistency measures were used: crude concordance and two measures based on Dice index, with or without semantics.

Figure 8 contains an alignment that has been obtained including in most cases the most C-terminal WD40 repeat (which is highly conserved), the SAM domain and the U box (as schematized in Figure 1).

(v) A graphical representation can be made of the weight of each codon along a multiple protein alignment that has been translated to a DNA alignment using a unique reference set for all the sequences of the alignment or using a reference set for each sequence.