Sentence examples for alignment subject to from inspiring English sources

In order to test how well each tool handles the task, we created a set of mRNA sequences with each sequence covered at least 1.5 times by same strand Megablast hits to the same subject (a chromosome or an unplaced scaffold), and the highest-identity alignment subject to the following conditions.

Furthermore, let S M i, j, k, l be the best score of a block alignment subject to the constraint that C i, C j and K k, K l are two pairs of blocks that are included as a paired match into the alignment.

As the alignment for these closely related species was straightforward, gaps were included in the sequence alignment subjected to the phylogenetic analyses.

Models of aa evolution best fitting the two alignments subjected to phylogenetic analyses were chosen using the Akaike information criterion in ProtTest 3.0 (Darriba et al. 2011).

Regarding the first question, we found that the prediction of PFM similarity based on a single pairwise alignment is subject to large errors, when compared against our SVR models that were based on 30 features.

To minimize misalignment problems, only conserved, unambiguously aligned regions of the alignments were subject to further analysis.

All alignments were subject to distance phylogenetic reconstruction in MEGA4 [63], maximum likelihood using PhyML3 [67] and PAUP*4b10 (D.L. Swofford, 2001, PAUP*, Sunderland, MA: Sinauer Associates), and Bayesian using MrBayes3.1.2 [68].

Alignments were subject to a posterior manual adjustment.

Resulting alignments were subject to phylogenetic analysis using MRBAYES [ 78].

Candidate sequences that contained densities of cDTs alignments were subject to EvoPrinterHD analysis to determine the extent of conservation.

Alignments were subject to maximum likelihood (ML) analysis by PhyML [ 20] with a WAG substitution matrix and 9 rate categories.