Sentence examples for alignment subject from inspiring English sources

Notation: Original DB: Database from which sequence was downloaded into local database: Type: RNA type (misRNA if not specified); Query Cov: percentage of database sequence covered in the alignment; Subject Cov: percentage of candidate covered by the alignment; Id: alignment identity; 1: local miRNA database with sequences from databases designated by the Non-coding RNA Databases Resource (NRDR).

In order to test how well each tool handles the task, we created a set of mRNA sequences with each sequence covered at least 1.5 times by same strand Megablast hits to the same subject (a chromosome or an unplaced scaffold), and the highest-identity alignment subject to the following conditions.

Furthermore, let S M i, j, k, l be the best score of a block alignment subject to the constraint that C i, C j and K k, K l are two pairs of blocks that are included as a paired match into the alignment.

FOR two immersive weeks in January, 11 curators selected from museums large and small gathered by day at the Center for Curatorial Leadership in New York for classes taught by professors from Columbia Business School in topics from endowment management to moral leadership to organizational alignment — subjects entirely absent from the typical education of a museum curator.

As the alignment for these closely related species was straightforward, gaps were included in the sequence alignment subjected to the phylogenetic analyses.

Models of aa evolution best fitting the two alignments subjected to phylogenetic analyses were chosen using the Akaike information criterion in ProtTest 3.0 (Darriba et al. 2011).

An alignment of subject pairs 12 and 16 is presented in Figure 2B as a simplified charge map (with basic charges shown in blue).

Regarding the first question, we found that the prediction of PFM similarity based on a single pairwise alignment is subject to large errors, when compared against our SVR models that were based on 30 features.

Therefore, neighbouring clones were joined by alignment with subject sequences obtained by a BLAST search.

For each alignment, the subject hit was translated and coding sequences were only kept if they contained both start and stop codons.

To minimize misalignment problems, only conserved, unambiguously aligned regions of the alignments were subject to further analysis.