The phrase "alignment strategy that" is correct and usable in written English.
You can use it when discussing a specific approach or plan related to aligning goals, objectives, or processes within an organization or project.
Example: "The alignment strategy that we implemented last quarter has significantly improved our team's performance and collaboration."
Alternatives: "alignment plan that" or "alignment approach that".
Importantly, INFERNAL uses a profile alignment strategy that scales linearly O N) with the number of sequences, and can be trivially parallelized.
We used a simple alignment strategy that assumed a low error rate and determined the alignment with the entire reference genome with the fewest number of differences (insertions, deletions, and substitutions) of the reads.
We apply such framework to several synthetic and real datasets and using five different alignment strategies that represent the main alignment approaches (Notredame, 2007).
The problem in using and improving published alignment strategies is that not all algorithms are well described.
Using a structured procedure, the SCDD can be utilized to develop a supply chain strategy that is in alignment with corporate strategic goals and the context and the environment of the enterprise.
Pre-existing alignments in BAM format (Li et al., 2009) that have been generated outside of QuasR can be imported, thereby enabling the use of any alignment software and strategy that produces output in the supported format.
The effect of errors can be better ameliorated by using an alignment strategy such as ours that allows for some mismatches between the reads and the reference genome.
PS relies on a global alignment as obtained by ClustalW [23] to identify the conserved blocks, while the more refined procedure of PG requires an alignment strategy, such as Dialign [22] that explicitly annotates aligned and unaligned regions.
While it is clear that each alignment strategy is susceptible to varying types and amounts of systematic error, we began by approximating it by using a simple experiment to estimate its effects.
Moreover, using multiple sequence alignment and pairwise sequence alignment strategies, we showed that RbTrxR-3 has high overall sequence similarity to other teleostean TrxR-3 proteins, including highly conserved active site residues.
In order to avoid including paralogous sequences in the alignment we developed a new search strategy that aims at excluding sequences that stem from recent gene duplications.
