Sentence examples for alignment stages of from inspiring English sources

Additionally, associated programs, such as ssahaEST, combine the search and alignment stages of SSAHA2 with several splice site models to increase detection of exon boundaries.

We measured the impact of two parallelization strategies of the alignment stage of GenomeKey ("BAM to BWA").

Then, during the alignment stage, for each comparison of a source Si with T, the pre-compiled data structure is used to speed up the part of Y.

Without Everyone Engaging Everything Early for project alignment, later stages of deployment and commissioning can be subject to "value engineering".

In the alignment stage, a set of N initial substructure pairs is found using a novel approach.

The time and space complexity of the alignment stage is decoupled from the size of the entire reference MSA by prefixing a sequence selection stage.

The proposed algorithm is robust in many scenarios and is hence a very interesting alternative for the range-bin alignment stage in the task of ISAR translational motion compensation.

The protein sequences of the blaCTX-Ms and their homologs were aligned with ClustalX 1.8 (24 ) by using the Gonet 250 similarity matrix with a gap-opening penalty of 35 and a gap-extension penalty of 0.75 for the pairwise alignment stage, and a gap-opening penalty of 15 and a gap extension penalty of 0.3 for the multiple alignment stage.

We then introduced an approach that combines these models with the consideration of known spliceforms already at the alignment stage, which extended the number of transcripts that could be measured reliably by almost 50% from 39 116 to 56 980, reaching 41% of all known transcripts (Fig. 1).

This necessitated a somewhat different design of each pipeline stage, but we sought to retain the core ideas: short, ungapped, multi-hit alignment for initial screening; gradually increasing alignment complexity through multiple filter stages; and parallelization to increase the base speed of each alignment stage.

In the case of the autism exomes, there were upwards of 10 read-groups per sample, but it clearly illustrates that there is an upper limit to parallelization of the workflow (alignment stage).