Sentence examples for alignment spans over from inspiring English sources

If the alignment spans over 85% of either sequence and either the e-value of the blast search is bellow 10−36 or the identity score is higher than 30%, both proteins are considered as belonging to the same family of orthologs [35].

Therefore, a sequence similarity of 45% with an alignment spanning over at least 45% of the query length was used.

A sequence similarity of 45% with an alignment spanning over at least 45% of the query length served as a match cut-off for correct classification.

A sequence similarity of 45% with an alignment spanning over at least 45% of the query was chosen as a match criterion when using the MEGABLAST.

As in the mitochondrial analysis a sequence similarity of 45% with an alignment spanning over at least 45% of the query length was used, in an effort to reduce bias.

The resulting alignment spans 2045 characters.

In such graphs, the nodes represent the objects to be compared (here ciliate V4 sequences), each pair being linked by an edge if there is significant similarity between the two corresponding nodes (here a minimum % identity (%ID), E-value, length, and alignment cover spanning over the two sequences).

The corresponding super-alignment spans 41,292 amino acid positions and has 50.4% data coverage.

To display alignments spanning multiple chromosomes (or on bacterial genomes spanning several plasmids), we envision two strategies.

The final alignments, spanning 12,648 nucleotide respectively 2,729 amino acid positions, were attained by concatenating all processed alignments.

In this way alignments spanning short repeats were not penalized, but alignments largely composed of likely repeats were removed.