Sentence examples for alignment span from inspiring English sources

Script used in shell and R to align reads and plot the percent identity and alignment span for each read against its known reference, as well as the number of bases aligned to each reference genome in the larger database.

Mean alignment span for the 376 hits was 242 bp with a mean E-value of 4.4e-22 4.4e-22

R and ggplot2 [ 26] were used to plot the percent identity and alignment span for each read against its known reference, as well as the number of bases aligned to each reference genome in the larger database.

The top two query proteins (ranked by alignment span sizes) were chosen to represent D. albomicans loci and fed to GeneWise [ 40], in order to determine their gene structures.

The splicing domains used in this alignment span only 126 residues and thus provide insufficient discrimination within the Fumigati group of the Aspergillus species to determine within-group relationships.

We aligned scaffolds assembled from male reads only to those assembled from female reads and selected male-specific scaffolds as candidate B regions using a blast E-value cutoff of 10-5 and a maximum GenBlastA alignment span size of 25% of the query [ 38].

Therefore, based on the score achieved from distance matrix, it could be concluded that there was no variation in nucleotide alignment spanning D2 region in 28 s rDNA of isolated B. bassiana and its strain AY283555.1 (Park et al., 2002; Holmes, 2003 and Soltis and Soltis, 2003).

Note also that these patterns are robust to variations in the selection of organisms for the 16S and 23S alignments, and therefore also to variations in the rRNA positions that each alignment spans.

In fact, all 4 cases where REV-1 was found to be best, the sequences came from the Los Alamos National Laboratory HIV database subtype reference alignment spanning all common HIV-1 (clade M) subtypes.

If the alignment spans over 85% of either sequence and either the e-value of the blast search is bellow 10−36 or the identity score is higher than 30%, both proteins are considered as belonging to the same family of orthologs [35].

The resulting alignment spans 2045 characters.