Sentence examples for alignment spacing from inspiring English sources

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The predecessor function is altered so as to not center around the line with slope | q|/| d| but instead to enable a cone-shaped search space (as illustrated in Figure 3B) since we want to consider shorted alignments: (7) where λ is the maximum slope allowed the aligning path in alignment space.

Sequences failing to align to the appropriate alignment space were removed, and remaining sequences were trimmed to overlapping alignment coordinates using commands in Mothur (screen.seqs, filter.seqs, and summary.seqs Schloss et al. 2009).

Using the simple nearest alignment space termination algorithm, the resulting aligner operates in linear time, requires a small memory footprint, and generates a high quality alignment.

Other clades are robustly supported throughout the alignment space, indicating that the exclusion of ambiguously-aligned regions can lead to a loss of phylogenetically valuable information.

The large number of positions not identically aligned between the three alignments made us confident that the alignment space investigated was not too narrow.

As a foundation, the ML framework is built for two categories of iterative optimization techniques (i.e. deterministic and stochastic) capable of exploring the sequence alignment space.

The clone pair (a, b) is of type-1 which have exactly the same code except the alignment, space and comment.

The technique of simulated annealing, by which an existing MSA produced by another method is refined by a series of rearrangements designed to find better regions of alignment space than the one the input alignment already occupies.

Finally, gap positions are introduced to the candidate sequence so that the final alignment is the same length as the reference database and positional homology is maintained using the nearest alignment space termination (NAST) algorithm.

D efinition 2 (Sparse Structure and Alignment Space).