The phrase "alignment software and" is correct and usable in written English.
It can be used when referring to alignment software in a context where additional information or items are being listed or discussed.
Example: "We need to evaluate the alignment software and other tools to improve our workflow efficiency."
Alternatives: "alignment tools and" or "alignment applications and".
Two novel primers, (designated ExdF & ExdR) were designed in silico with the aid of computer-aided alignment software and with the alignment of multiple species of Exophiala, as well as with other commonly described yeasts and filamentous fungi within CF sputum, including Candida, Aspergillus and Scedosporium.
IM, AN, and RL wrote the alignment software and postprocessing code.
Three different methods were used to detect Indels: 1) Multiple alignment of genomic sequences was performed by using Mauve multiple alignment software and the progressive alignment option.
Also, insertions, deletions, and splice variants may be missed by exon capture sequence due to limitations in alignment software and short read sequencing.
These pools were subsequently mapped back to their corresponding reference sequences using commonly applied alignment software and at a range of ultra-low to moderate sequencing coverage depths (0.1×, 0.5×, 1×, 2×, 4×, 8× and 16×).
Compared with Nejentsev et al.'s results, the exact values of our Fisher's P-values were slightly different due to different alignment software and filters used in this article to process data.
Amino acid sequences were aligned with MAFFT alignment software (Katoh and Toh 2010) using default parameters and visualized and edited in Geneious v7.1.7.
AB implemented the ORF extraction and alignment software used, and advised on strategy.
Instead, the Element Mapping module takes output from known alignment software (BLAST and BOWTIE2 are supported) and compares the matched locations to user-chosen genome annotation files.
The Tiling Assembly pipeline, depicted in Fig. 1, begins with alignment of RNA-seq short-read data to the appropriate genome using the alignment software, Bowtie and Tophat.
We generated new multiple-sequence alignments using PRANK alignment software (Löytynoja and Goldman 2005) from single sequences of D. melanogaster, D. simulans, D. sechellia, D. yakuba, D. erecta, and D. ananassae downloaded from FlyBase.
