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The alignment size and RMSD based on this virtual alignment are termed the "virtual alignment size" and "virtual RMSD (vRMSD)", respectively.
Therefore, the (structural) alignment size is a very important parameter in this evaluation mechanism.
All resulting alignments of NCIVs are sorted according to alignment size (number of matched NCIVs).
It has been shown that, for an alignment of N sequences, alignment size bias is proportional to 1/N [70].
We then examined the influence of sequence length and alignment size on the accuracy of our algorithm.
Additionally, the determined range of hinge loops and some novel structural measures defined in this study, such as the virtual alignment size, vRMSD and vS-div, are also provided.
Similar(22)
By gradually filtering out homologs with large alignment sizes from a structural dataset, the remaining data will be more and more challenging for PSC methods to classify DS and common homologs.
They also showed shorter alignment sizes.
BAM functioned superiorly compared to RLE on both metrics at all alignment sizes.
A number of metrics such as run time, memory usage, and file size were measured for different alignment sizes.
The alignment sizes range from 0.1 to 42 kb, and the number of taxa from 6 to 33 mammals.
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