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After a period of close alignment since the collapse of Lehman Brothers in September 2008, US and European monetary policies are about to diverge in dramatic fashion.
However, in these cases, an higher overlap does not necessarily imply an easier alignment, since the views can be heavily affected by holes which may cause instability in the feature localization as well as a degraded reliability of the computed descriptors for the features close to the hole borders.
The gapped extension usually commences from the seed to the partial alignment, since the score of the alignment with the seed is typically much higher than that of the partial alignment.
Both the forward and reverse complement of each reference transcript were considered for alignment since the reference transcriptome was assembled from non-directional sequence data.
However for the structural alignment problem, this approach does not yield the optimal alignment since the problem does not exhibit the optimal substructure property.
We only included five T. denticola attC representative sequences in the alignment, since the other three lack identifiable AAC sites even though they all share sequence similarity with the attC sites included in the alignment.
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Additionally, eight of these 14 sites had a tendency to change to amino acids that are potentially phosphorylated residues, particularly at positions 496 and 503 (505 and 512 positions in the alignment), since these sites are relatively near the ASARM motif and the cleavage site by cathepsin-B.
Dutch political alignments since the mid-20th century have evolved only gradually and until the 1990s were always dependent on the Christian Democrat parties of the centre.
As for the DNA sequence comparison, we used an in-house program to perform gapless alignments since the binding motifs are generally short.
Substitution matrices are also important in programs that utilize "sequence-profile" 2 and "profile profile" 5, 6 alignments, since the initial profiles are built by collecting homologous sequences identified by using a pairwise comparison score matrix.
Note that it is not sufficient to remove the vertex cover C from F q, r to obtain a valid alignment since in the construction of C, only inconsistent pairs of fragments were considered.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com