Sentence examples for alignment significance from inspiring English sources

It should be noted that in order to align the sequences of these 3D patterns (ASP637, PRO671, SER636, GLU638 and ARG641 to the Atom459, and ASP114, PRO113, SER115, GLU70 and ARG112 to Atom151), a sequence-based method must incorporate at least 40 gaps, with the corresponding decrease of the alignment significance.

Here we review several of the published alignment methods, as well as a method for determining alignment significance.

The authors model the distribution of alignment scores for spurious alignments so they can use a map specific cutoff for determining alignment significance.

The appearance of log-odds scores is particularly exciting, because they underlie much of sequence alignment theory, including statistical assessment of alignment significance.

After alignment, the significance of amino acid variation was determined by using the χ test and a phylogenetic tree was constructed with MEGA software (version 5.1).

MetSign[245] provides several bioinformatics tools for raw data deconvolution, metabolite putative assignment, peak list alignment, normalization, statistical significance tests, unsupervised pattern recognition, and time course analysis.

This approach potentially identifies paralogs sequences and allows color-coded alignment by BLAST significance [ 60].

Results: This paper proposes a new statistical framework to assess structural alignment quality and significance based on lossless information compression.

The global test for reciprocal recombination or gene conversion events was performed with 10,000 permutations of the sequence alignment to assess significance.

The requirement of matching hydrophobic patterns and the larger number of alignment positions ensured significance of annotation transfer within such segment families.

The E-value is then an estimate of the expected number of multiple alignments with statistical significance as great or greater than the observed alignment.