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Alignment – Sets how the data will be visually aligned inside each cells (left, right or centered).
Pairwise distances at non-synonymous (dN), synonymous (dS) and 4-fold degenerate (4D) sites (d4) were estimated for individual genes in both gymnosperm and angiosperm alignment sets using codeml (PAML 4.0) [ 43, 44], with settings seqtype = 1, CodonFreq = 2, Runmode = -2, and transition-transversion ratio estimated from the data.
ML tree searches were performed with PhyML 2.4.5 [103], [103] for each of the alignment sets (IR, IGF1R and IRR) under the best-approximating model selected by ProtTest [63] using the Akaike information criterion [104].
Soluble tables were generated from four different alignment sets.
For the AT-exclusive alignments, seven alignment sets were generated, and 5, 10, 15, 20, 25, 30, and 50 bp inversions were included in the individual alignment sets.
A higher BP will favor alignment sets with fewer, larger, alignments.
Similar(28)
More detailed phylogenetic analyses with a reduced alignment set (22 cysteine proteinases) were performed by NJ and maximum parsimony (MP) methods.
Site PP1: a short-term safety measures (sets of countermeasures "A", "B" and "C"), b re-design of the horizontal alignment (set of countermeasure "D").
Road alignment setting out provides important reference marks and indicators for workers to lay kerbs in accordance to design alignments, and any mistakes would significantly affect the road construction project.
East Avenue, and likewise NY 96, takes on the northwesterly, four-lane alignment set by Fairport Road and begins to parallel the routing of I-490 once more as both enter the town of Brighton.
We have recast this problem into a progressive alignment setting by implementing local profile-profile alignments of gene orders.
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