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The multiple alignment serves as an entry to further analyses and several processing steps are required to filter the data, particularly the removal of low-quality regions.
Another segment of old alignment serves properties and St. Martin's Episcopal Church between the exit and entrance ramps from southbound US 113.
Because the periodicity of the alpha helix should no longer be detectable, this alignment served as a negative control.
The multiple sequence alignment served as an input file for the software package HMMER (Version 2.3.2; http://hmmer.wustl.edu) to construct and calibrate a model for β-defensins using the tools HMMBUILD and HMMCALIBRATE, respectively.
Their inclusion in the Viterbi alignments serves as a quality control.
The 16S rRNA alignment served to construct a reference tree by maximum-likelihood (ML) using TREE-PUZZLE with a HKY nucleotide evolution model [ 48] and a Gamma model [ 49] for evolution rate variation between sites.
The five protein sequences were aligned with MAFFT as described above and the alignment served as input for a Bayesian tree search with BEAST.
The simulated and real reads were aligned to the reference genome using TopHat2 [ 23], and the resulting alignment served as evidence for hybrid and evidence based gene prediction.
Do contrast, grouping, and alignment serve the function of the chart? 5. Do ask others for opinions.
Organizations like the Bill and Melinda Gates Foundation and Genentech have built governance, infrastructure and measurement systems to ensure alignment, serving to reinforce the right behaviors over time.
By the mid-1940s, this route had shifted to roughly the present Interstate 35 alignment, serving Wichita.
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