The phrase "alignment section of the" is correct and usable in written English.
It can be used when referring to a specific part of a document, report, or system that deals with alignment-related information or guidelines.
Example: "In the alignment section of the report, we outline the necessary adjustments to ensure proper alignment of the components."
Alternatives: "alignment part of the" or "alignment area of the".
You can also change the font and style as well as the alignment of the numbers or text by using the "Font" and "Alignment" sections of the "Home" tab.
The examples of pairwise alignment in this paper use fasta program (FASTA package, version 3) and water program (EMBOSS package, version 6.3.1) for comparison while pairwise alignment section of ApicoAlign uses water program only.
First, we visually compared alignments for congruence in their ability to align sections of the alignments (especially the inner core) using AltAVisT [54] and the overall sequence identity calculated from each alignment.
Each alignment contains core-regions that correspond to the most reliably alignable sections of the alignment.
To identify alignment sections of random similarity prior to tree reconstructions, we used ALISCORE, which, compared to the commonly used Gblocks [ 81], is not dependent on the specification of an arbitrary threshold [ 65].
The region between the trnT and rpl2 genes in T. pellucida consists of only 1,329 bp, with BLASTn results for this area indicating 81% and 86% alignment to sections of the nad7 genes of A. rugelii and P. patens respectively and 90% sequence identity in both cases.
Due to the concentration difference, photo-carriers diffuse into the Si NWs, followed by being extracted to the electrodes by the built-in electric field in the NW, together with the photo-carriers generated in the NWs. Figure 3b presents the equilibrium band alignment of the cross section of the hybrid structure.
Because the other sequences were aligned to the D. melanogaster genome, any section of the alignment where the sequence for D. melanogaster was unavailable would be unreliable and was excluded from further analyses.
The algorithm dynamically considers various candidate alignments, partitions each candidate alignment into sections, and determines the most appropriate set of parameter values for each section of the alignment.
As described in the materials and methods section, alignment of the RNA-seq reads on the P. profundum genome allowed to identify transcripts boundaries and the P. profundum global operon structure.
