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Exact(47)
In particular, we design a novel alignment scoring function that combines dot product and BLOSUM62, thereby achieving a great balance of sensitivity and accuracy.
Only alignments with ≥98% identity or only one mismatch, with the second alignment scoring worst than the first were accepted for analysis.
The following pairwise alignment scoring scheme is obtained.
Peter F. Arndt worked on an appropriate alignment scoring scheme.
The underlying alignment scoring scheme is the general reversible model [ 21]: where Q is the transition rate matrix.
For each M, we identified all π vectors, if any, with at least half of the columns in the corresponding sampled alignment scoring a P <0.001.
Similar(13)
Among the nonsynonymous SNPs we identified, those that cause a dramatic protein sequence change from the standpoint of an alignment-scoring matrix (large alignment score change) may be of particular interest.
Local alignments align subnetworks to maximize the local alignment score.
Algorithm continues to align neighboring nodes until their alignment score is relatively high (more than the average of the alignment scores).
In our program, the alignment score is the number of aligned characters.
The alignment score lies between 0 (no similarity) and 1 (identical PhAST-Sequences).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com