The phrase "alignment satisfied" is correct and usable in written English.
It can be used in contexts where you want to indicate that a certain level of agreement or conformity has been achieved, often in technical or project management discussions.
Example: "After reviewing the project requirements, we can confirm that the alignment satisfied all stakeholders' expectations."
Alternatives: "alignment achieved" or "alignment confirmed".
A valid alignment satisfies the following criteria: 1) the similarity between aligned region is ≥ mi n s, 2) the length of the aligned region is ≥ mi n ol, and 3) the overhang of the alignment is ≤ ma x oh.
To ensure that inferred DIMs were results of actual point mutational events rather than alignment artefacts, we only kept DIMs where the 40 bp alignment window satisfied the following criteria: (1) maximum four mismatches, (2) maximum two gaps (indels) and (3) no mismatches in the three immediate positions upstream and downstream of the candidate DIM site.
Finally, in our hands homology models based on KcsA developed with Alignment A satisfy the mutagenesis data on which Alignment B is based as do models using alignment B, and models using Alignment A are more consistent with mutagenesis studies of other groups [ 3, 13].
This gentle shuffling procedure may fail to remove the secondary structure signal in some cases because too few pairs of alignment columns satisfy the stringent conditions for shuffling.
Bowtie uses a backtracking strategy to perform a depth-first search through the entire space, which stops until the first alignment that satisfies specific criterion is found [ 15].
First, the parameters of BLASTP alignment should be satisfied: identity > 70%, coverage of A. thaliana gene > 75%, coverage of B. rapa gene > 75%.
Each reference set consists of multiple sequence alignments that satisfy specific criteria, such that different reference sets can be used to test the performance of multiple sequence alignment algorithms under different conditions.
Moreover, an alignment is called a pure alignment if it satisfies two conditions: (i) it contains at least three MIPS annotated proteins and (ii) there exists a complex in MIPS that covers >75% of its MIPS annotated proteins.
As shown in their results, the proposed method can reduce the dimension of feature vector but their alignment results are not satisfied.
A set of structure elements in the first and second sequence, which preserves the interval ordering is called a feasible structure element alignment and must satisfy the following two requirements.
This elimination of unproductive squares reduced the complexity of the dynamic programming task as errors accumulated in the alignment and permitted the alignment to be terminated when a total absence of potentially productive squares in the active portion of the grid revealed that no alignment path could satisfy the input requirements.
