Sentence examples for alignment sampling from inspiring English sources

To further investigate the evolutionary ancestry of the gene fusion character, we calculated individual phylogenies for the three pterin biosynthesis domains with both comprehensive and reduced taxa alignment sampling.

A "Noah's Ark" dataset was also analysed which comprised 14 eukaryotes (indicated by asterisks in Fig 1) sampled from each major taxon and included 120 sequences and an alignment sampling of 307 amino acid characters.

We developed a maximum likelihood model fitting procedure to a collection of HIV-1 alignments sampled from different viral genes, and inferred two empirical substitution models, suitable for describing between-and within-host evolution.

The Context program, which uses context-sensitive indels, was trained on a separate set of 200 alignments sampled from our model.

Multiple sequence alignment samples can be summarized in several ways.

Poor electron optical alignment, drift, detector noise, magnification variations, inaccurate defocus determination, errors in alignment, sample heterogeneity, flexibility, incomplete angular coverage, and radiation damage can all combine to give dramatic falloff of the high-resolution information.

To understand performance on short sequences, we shortened each of the gene alignments by sampling the first 10, 25, 50, 100, or 200 sites from the gene sequence alignments.

Preprocessing the alignments and sampling a constant number of samples scales linearly with the number of reads.

The figure shows the contigs containing the genes and graphs of the alignment depth sampled along the genes.

Given Λ A, a multiple alignment is sampled from P(A(t )| Λ A, S(t ),Q) using the SCFG model.

MM initiated the study, participated in its design and coordination, carried out the DNA sequencing work, performed the sequence alignment, and sampled the morphological characters.