The phrase "alignment routine" is correct and usable in written English.
It can be used in contexts related to programming, engineering, or any field where processes or systems need to be aligned or calibrated.
Example: "Before we proceed with the project, we need to run the alignment routine to ensure all components are properly synchronized."
Alternatives: "calibration process" or "synchronization procedure".
Local HMM-HMM alignment routine provided by HH-suite (Soding, 2004) is used to measure cluster-cluster similarity.
IMAGIC [ 36] was used for all other image processing, except for the multi-reference alignment routine for which SPIDER [ 38] was used.
Sequence alignment was initially performed using MUSCLE 3.8.31 [ 38] in the multiple alignment routine followed by manual adjustment in Se-Al v2.0a11 (http://tree.bio.ed.ac.uk/software/seal/).ac.uk/software/seal/
Class averages of the IP3R were calculated after reference-free alignment using IMAGIC and then refined using the SPIDER alignment routine using class averages of the initial reference-free alignment.
Amino acid sequences were aligned using a version of the ClustalW multiple-sequence alignment routines available in the computational tools at the EMBL-EBI website.
We successfully tested our alignment routines on other reconstructions containing several thousands markers.
Positive hits from a BLAST search or similar local alignment routines are often employed to find such traces of contamination, but results need to be interpreted with caution.
The creation of a multiple sequence alignment is a routine step in the analysis of homologous genes or proteins.
Two-dimensional (2D) projection averages were generated using reference-free multivariate statistical analysis methods in IMAGIC (van Heel et al., 1996) and with the Iterative Stable Alignment and Clustering routines implemented using the ISAC program (Yang et al., 2012).
Rob Infantino came close to being ripped off when a routine wheel alignment for his BMW, which should have cost no more than $120, was estimated by one greasemonkey at $4,000.But instead of forking out, Mr Infantino was driven to set up Openbay, a website and app that gives negotiating power to motorists by letting garages bid for their work.
Small insertions and deletions (hereafter called indels) up to a few base pairs in length were called by sensitive alignment tools in the routine re-sequencing process [ 2, 17, 18].
