The phrase "alignment results on" is not correct in standard written English.
It seems to be an incomplete expression and may need additional context or rephrasing to convey a clear meaning.
Example: "The alignment results on the new model were promising, indicating improved performance."
Alternatives: "alignment outcomes on" or "alignment findings on".
Therefore we first addressed this tradeoff by finding the optimal Spin Image window size for our data: we experimentally found that a window size of 15 and a bin size equal to the average point spacing gave the best alignment results on all the test datasets.
In this section, we compared the network alignment results on the simulated network data.
A third marker, 57.10, gave unreliable alignment results on HSA6 with relatively high E-values (≥ 3.2) and was also removed.
We compared Dissect alignment results on contigs from C4-2 with long range PCR validated fusions reported by the fusion discovery tool Comrad (McPherson et al., 2011a) on the same dataset.
Through extensive experiments involving a large pathway database, we demonstrate that when compared with a state-of-the-art alternative, the CAMPways algorithm provides better alignment results on metabolic networks as far as measures based on same-pathway inclusion and biochemical significance are concerned.
Based on the alignment results of orthologous in the NCBI using the Blastx tool, the TFs would be determined whether they contained the complete ORF.
We used SOAPsnp (Li et al. 2010) to identify the SNP sets for each inbred line based on the alignment results of all sequencing data with the BN genome sequence.
Based on the alignment results of SMART (http://smart.embl-heidelberg.de/), motifs MB1 and MB4 were equivalent to the B-box1 domain, and MB3 or MB6 to the B-box2 domain (a degraded B-box [ 15, 16]), and MB2 and MB7 to the CCT domain.
With the multiple alignment results of human, mouse and rat on UCSC Genome Browser, we used the 100 bp upstream and downstream sequences of all the putative binding sites as the input sequences of PAML [55] to get their phylogenetic tree.
The species phylogenetic tree was constructed based on the alignment result of cytochrome oxidase subunit I (COI) genes, from different species (T. castaneum: KJ003352.1, I. typographus: KF846151.1, D. ponderosae: JQ308497.1, D. valens: EU404100.1 and A. corpulenta: the reference [ 19]) using MEGA5.0.
Based on the alignment results for actin domain sequences of all the actin genes found in the seven species, we constructed a phylogenetic tree using the Bootstrap neighbor-joining (NJ) method with a Jukes-Cantor model by MEGA v4.0 [ 29].
