Sentence examples for alignment reporting from inspiring English sources

The "-k 1 --best" and "-m 1" modes of alignment reporting were also used in combination with the end-to-end k-difference (−v) alignment mode.

In order to better understand the role of those mutations in disturbing normal channel functions on a structural level, we mapped the disease-related mutations of other human Nav channels onto the Nav1.7 structure model based on the sequence alignment reported in Wu et al., 2016 (Fig. 3).

The first aspect is the optimality of the alignment reported by FATCAT.

Because the search is not exhaustive, Bowtie2 does not guarantee that the alignment reported is the absolute best in terms of alignment score.

The guppy LWS opsin sequences obtained here and those reported by Hoffman et al. [ 23] were added to the 390 bp alignment reported by Weadick and Chang [ 24].

Data for naturally occurring transitions were extracted from a 32-genome alignment reported in our previous comparative genomics study of P. aeruginosa [ 21].

To explore the effect of quality score filtering, we checked the mapping quality scores in the untrimmed S1 and S2 data with one alignment reported randomly.

Bowtie2 does not guarantee that the alignment reported is the best in terms of alignment score, and when there is more than one potential mapping location of equal score, one reported location is selected at random.

Each distinct alignment reported by TBLASTN uses only one of the possible reading frames of the DNA sequence; TBLASTN does not explicitly consider the possibility that an alignment could be extended in another frame.

Our alignment of SFTP amino acid sequences, that has been improved relative to an alignment reported recently (24), shows that proteins of all types of SFTPs (i.e. filaggrin, hornerin, trichohyalin, etc).

A seed length of 28 bases was used with a maximum of 2 mismatches permitted between the seed and reference genome, and only the best alignment reported for each read.