Sentence examples for alignment reads to from inspiring English sources

Specifically, for each sample, we mapped the filtered BWA alignment reads to a chromosome and exact base pair locations for input into the CNV-seq software.

Once CCS reads are sorted, the pipeline uses Bowtie2's default alignment (end-to-end read alignment) to align reads to the corresponding reference sequence and outputs a set of alignments in SAM format.

For HPV type detection, we indexed the multi-fasta HPV reference file using BWA aligner followed by alignment of reads to indexed genome (Li and Durbin, 2009).

We mapped expression QTL, using gene-level counts estimated from alignment of reads to the reference NCBIM37 transcriptome and again using counts estimated from alignment to individualized transcriptomes.

In SRST, bwa was used for global alignment of reads to MLST loci and their flanking sequences; in SRST2, bowtie2 is used for local alignment of reads to any locus, without need for flanking sequences, allowing detection of acquired genes as well as MLST.

The methods section describes the alignment of reads to the assembled contigs and entropy calculations.

EL performed the initial alignment of reads to the reference genome and splice junctions library.

InDels were detected by the alignment of reads to reference sequences [ 31].

Studies that use only standard alignment of reads to a reference fail to assess such divergent sequence.

FC and CDT performed 454 sequencing, data assembly, SNP predictions and alignment of reads to the M. truncatula genome.

After alignment of reads to the reference genome, the genomic regions with continuous reads and uniquely mapped reads ≥ 2 formed transcription active regions.