Sentence examples for alignment rates for from inspiring English sources

Additional file 1: Table S1 shows the alignment rates for all samples.

As seen in Figure 4a, Bowtie1 can exhibit very low alignment rates for these samples.

The median total raw reads for the normal and tumor samples were approximately 11.8 million and 16.3 million separately, and the median alignment rates for the normal and tumor samples were 93.01% and 92.48% separately (Supplementary Table 2 and Supplementary Table 3).

Sequencing performance QC (Step 3) is performed during the alignment process, by estimating specific statistical metrics (that is total number of reads, % of unpaired reads, % of reads aligned 0 times, % reads aligned exactly once, % of reads aligned more than once, and overall alignment rate) for each sequenced sample.

This file contains the read depth and alignment rate for each single-cell RNA-seq sample from the Cas9 microinjected controls and the sgRNA2b/Cas9 ribonucleoprotein complex microinjected embryos collected at the blastocyst stage.

C) Plot showing percent-alignment rates for libraries.

At least 37 million quality-filtered reads for each sample was generated, with an alignment rate of approximately 60% for each library.

Mapping all RNA-seq reads against both transcriptomes (CLC or Velvet/Oases) revealed that the overall mapping success rate, as a measure for assembly quality, was significantly lower for the Velvet/Oases assembly compared to the CLC assembly (see Additional file 1), with an average overall alignment rate of 91.7 % and 73.4 % for the CLC and Velvet/Oases assembly, respectively.

We retained alignments with an alignment rate of more than 70% and a mapping identity of more than 40%.

Overall read alignment rates were above 90%% for all libraries.

Other possible causes for low alignment rates could be misinterpretation of modified nucleosides by the sequencer or RNA editing of sequences prior to packaging into exosomes, making it difficult to compare our transcriptomic data with the available reference genomes derived from DNA sequencing.