Sentence examples for alignment quality lower from inspiring English sources

Negative and positive scores indicate alignment quality lower and higher than for random sequences, respectively.

Parameters for gap-open and gap-extension have a large influence on alignment quality lower than APSI ≤ 75%%; optimal parameter combinations are shown for several programs.

Points A, B and C correspond to the examples shown in Figure 8. Figure 8 Impact of lower alignment quality.

Next we filtered out read alignments with a mapping quality lower than 30, which avoids reads mapped to multiple locations alignments with low similarity.

We first discarded alignments with the mapping quality lower than 30, and then made variant calls by mpileup and bcftools programs embedded in SAMtools [ 20].

The E value describes the probability of the match resulting from chance (a lower value corresponds to a lower probability), and the bit score evaluates the combination of alignment quality and length (a higher value corresponds to a better alignment).The y axis of each diagram shows the negative log10 of the P value and the x axis shows the respective parameter value.

However, inference of substitution histories is more difficult in comparison species, whose genome assemblies tend to be lower quality and often lack the resources for proper alignment quality filtering.

Obviously, the alignment quality depends on the contradictory requirements of obtaining a higher length of alignment and a lower RMSD.

Finally, we applied an alignment quality filter to the reads in U, discarding all alignments with a BLAST identity score lower than 95% and hs less than 80%.

The observations by scanning electron microscope (SEM) suggest ultrahigh alignment density and good alignment quality of SWCNTs.

The alignments were examined and manually trimmed to ensure alignment quality.