Sentence examples for alignment quality filter from inspiring English sources

Finally, we applied an alignment quality filter to the reads in U, discarding all alignments with a BLAST identity score lower than 95% and hs less than 80%.

The alignment quality filter discarded 541,122 reads, leaving a total amount of 5,494,405 redundant ISs (the R set).

Our sequence and alignment quality filters help correct for these differences.

In addition, since SOAP2 and Bowtie do not have alignment quality scores in their respective output files, to ensure a relatively fair comparison, no alignment quality filters are used.

However, inference of substitution histories is more difficult in comparison species, whose genome assemblies tend to be lower quality and often lack the resources for proper alignment quality filtering.

This is in fact what we can observe in the results shown in Table 4. Improvements on GLAM2's speed and alignment quality after filtering the CFTR dataset with TUIUIU*.

The bam file produced for quantification were first filtered to eliminate poorly aligned sequences using an alignment quality threshold of 30 and a PCR duplicate filtering step (samtools v. 0.1.19-44428 cd).

The most common approach to reference-based genome assembly is a single round of alignment followed by quality filtering and variant detection.

First, the three-species alignments were filtered for alignment quality.

This step of filtering for alignment quality is important because site-wise estimates of positive selection are highly sensitive to short poorly aligned regions (Jordan and Goldman 2012).

The high number of PSGs along the chimpanzee lineage cannot be explained by the incorrect calling of orthologues or alignment quality, as we employed conservative filters during the orthologue calling procedure and manually checked all the PSG alignments.