Sentence examples for alignment programs from inspiring English sources

For both simulated data sets, we align these reads using the four selected alignment programs.

On bacterial genomes however, these aligners might be slower than hash table based alignment programs.

Thus, alignment programs can be evaluated by their ability to correctly align these core blocks.

CLUSTALW multiple alignment programs (http://www.ddbj.nig.ac.jp and http://mobyle.pasteur.fr) were used to align the amino acid sequences.

The optimization method is also used to compare distinct sequence alignment programs and distance functions.

Different alignment programs handle the issue of reporting unique hits or multiple hits differently.

Thus, a total of eight different versions of the alignment programs were tested (Table 1).

'SSAHA'GMAPMand, and 'Mosaik' are all-purpose sequence alignment programs, not necessarily optimized for SNP discovery.

Widely used alignment programs such as ClustalX do not screen for inversions.

We evaluated Murasaki by comparing it with the genome alignment programs BLASTZ and TBA.

For both alignment programs, gap opening and extension parameters were set to their defaults.