The phrase "alignment processing" is correct and usable in written English.
It can be used in contexts related to data analysis, machine learning, or any field where aligning data or processes is relevant.
Example: "The team focused on alignment processing to ensure that all datasets were compatible before analysis."
Alternatives: "data alignment" or "synchronization processing".
Following alignment processing, variant calling and variant filtering were performed.
In order to further verify candidate miRNAs, mature miRNAs and pre-miRNAs from S. japonicum and S. mansoni genomes were subjected to family alignment processing using the ClustalW2 program (http://www.ebi.ac.uk/Tools/clustalw2/index.html).html
The alignment processing method provided two parameters, for retention time (RT) and for mass spectral matching.
Details of our alignment processing and alternative splicing detection are found in Additional file 1.
We altered the alignment and alignment processing parameters to test the robustness of our analysis.
The software pipeline is implemented in Python (alignment processing module) and R (statistical analysis module).
WES analysis including alignment, post-alignment processing, and variant calling from WES data was performed as described previously44.
In addition, alignment and post-alignment processing are rapid.
We opted to use Bismark [ 14] for its flexibility and compatibility with downstream processing tools such as MethylKit [ 19], which we use routinely for post-alignment processing.
We also tested whether local realignment reads around insertions and deletions and base quality re-calibration (post-alignment processing tools in the GATK package) improved results.
However, they are different with respect to the specific underlying alignment algorithm, read length, guidance from optionally provided annotation file, post-alignment processing to assemble fusion contigs, and parameters used to retain fusions from candidate fusions.
