Sentence examples for alignment probability from inspiring English sources

Given two biological sequences, these methods can be used to estimate the posterior symbol alignment probability for each symbol pair that may be aligned in the final sequence alignment.

Then we derive several lower bounds for the alignment probability under various scenarios by using a Bayesian approach.

Numerical experiments show that the lower bounds of the alignment probability are valid when they are used to estimate the size of the selected set as well as the expected alignment level.

CNFpred integrates as much information as possible in order to estimate the alignment probability of two residues.

The marginal alignment probability can be calculated efficiently using the forward backward algorithm (Lafferty et al., 2001).

Equation (5) is similar to the definition of TM-score except that the latter does not have a term for the marginal alignment probability.

Then, alignment probabilities and node weights are distributed in the trees.

This may again negatively affect the quality of the symbol alignment probabilities estimated based on the pair-HMM.

Note that the run-time calculation excludes the alignment procedure, but includes all other computations (including computing alignment probabilities in BitSeq's case).

The latter restricts the alignment space to an envelope around the base matches, whose sequence alignment probabilities exceed a fixed cutoff.

However, the aforementioned ambiguity also negatively affects the quality of the estimated symbol alignment probabilities, which is especially noticeable for sequence pairs with low percentage identity.