Sentence examples for alignment preferred from inspiring English sources

From the output alignments, the best alignments among multi-mapped reads were chosen by following criteria in order: maximum matched bases, minimum mismatch, minimum number of gaps in query of alignment, minimum number of gaps in target of alignment, minimum number of gapped bases in query of alignment and minimum number of gapped bases in target of alignment (preferred first).

Third, some aligners may follow a parsimony strategy in which a "simple" alignment is preferred to a complex (e.g. spliced) alignment.

This correlation suggests that calcite cementation and pore-filling kaolinite reduce velocity anisotropy of the Ferron sandstone by reduction of the net grain alignment or preferred pore orientations.

There was a flexible oscillation between the two parts, and the alignment procedure preferred the more stable part1 during the conventional refinement (Figs. 4C and S5A).

Although the influences of both temperature and flow rate on the retention time are non-linear and, in the case of temperature, quite complex, a linear alignment is preferred as, in real applications, one cannot decide whether deviations in the retention time are due to one of the parameters or even to a combination of both.

To perform detailed comparisons of networks, graph alignments are preferred.

In this article, we show that scoring matrices have preferred alignment identities and alignment lengths, and that BLOSUM62 can produce overextended alignments, most often between sequences with >33% identity.

The former case is particularly problematic because RNA-seq alignersometimeses prefer direct alignments to spliced alignments, causing spuriously aligned reads to accumulate on processed pseudogenes.

Processed pseudogenes containing concatenated exons are a major source of error in pseudogene RNA-seq alignments because RNA-seq aligners sometimes prefer unspliced alignments to spliced, particularly in the presence of SNPs.

A clear alignment preference was observed, with eight participants preferring the PF over the Neutral and DF alignments.

The Ag nanoparticles' preferred alignment in PMMA is at the (111) plane.