The phrase "alignment potential" is correct and usable in written English.
It can be used in contexts discussing the capacity for alignment or agreement, often in fields like business, psychology, or technology.
Example: "The alignment potential of our teams will determine the success of the project moving forward."
Alternatives: "capacity for alignment" or "ability to align".
The local alignment potential quantifies how well one sequence residue can be aligned to one template residue based on context-specific information of the residues.
The local alignment potential quantifies how well one sequence residue can be aligned to one template residue based on context-specific information of these two residues.
To speed-up, our method first aligns a target to all the templates using only the local alignment potential and then ranks all the templates using both the local and global alignment potentials described in Section 2. After ranking, only the first-ranked templates are used to build a 3D model by MODELLER for each target.
An alignment is assumed to be optimal if it maximizes the alignment potential.
Therefore, the pairwise alignment potential is calculated as follows, (8) where L is the alignment length.
As there are O(L ) pairwise terms in right-hand side of Equation (8), we normalize it by L so that the global alignment potential has the same scale as the local alignment potential.
Given a target, we first thread it to this reference template database and then estimate an extreme value distribution from the ∼1800 alignment scores (i.e. alignment potentials).
Those Illumina reads that align partially to the reference based on the SSAHA2 alignment are potential cases of large deletions for which a large gap could not be introduced given SSAHA2s scoring scheme.
The three-dimensional reconstruction spatiality model and entropy of spectral-energy distribution of collagen alignment are potential tools in the research of atrial remodeling.
We also scanned the GHR alignment for potential indel signatures.
A set of simulated alignments, i.e. 26 alignments with length around 100,000 bps are also generated according to the frequency and the conservation of the nucleotides in the alignment of potential non-exons.
