The phrase "alignment portion" is correct and usable in written English.
It can be used in contexts where you are referring to a specific part or section that deals with alignment, such as in technical documents or discussions about design or engineering.
Example: "The alignment portion of the blueprint is crucial for ensuring that all components fit together properly."
Alternatives: "alignment section" or "alignment segment".
First, reads that are almost fully aligned to the reference sequence (i.e. only a few bases extend past the breakpoint) can be aligned with mismatches in the global alignment portion of the BWA algorithm.
Specifically, Mytilus spp. COX1 residues were all found to be under strong purifying selection whereas of the 165 amino acid positions in the F-ORF-VD1 alignment portion, 125 residues (76%) were found under purifying selection, 5 (3%) were under neutral selection and 35 (21%) were found to possess a Ka/Ks>1, indicating positive selection.
Briefly, for each assembled contig, best BLAST HLA alignments are reported, tracking the sequence identity over the alignment portion, as well as over the length of the contig.
By using the same pairwise alignments, we were able to focus our evaluation on the multiple alignment portion of Mugsy compared to TBA.
Since the high substitution rate of mROM1 produces no indels or poor alignment portions, we suspected that acceleration is directional or under certain constraints.
Based on the NCBI taxonomy, the profile-alignment portion of our algorithm assumed that Campanula was monophyletic.
Ambiguously aligned portions of both alignments were excluded using Gblocks version 0.91b [ 67] with default block parameters.
Def {2a} GA-alignments = portion of the GPxI that contains the aligned GA-sequences not in their natural order, but re-ordered by a certain logical criterion (e.g. by the size of poly(A) sequences in the upstream end of the GA-sequences, etc. ).
(A ) Alignment of portions of sequence from Rsp5 with corresponding regions of human NEDD4L, NEDD4, Smurf1, Smurf2, WWP1, WWP2, ITCH, NEDL1, NEDL2, and E6AP showing conservation of key residues establishing the ligation mechanism.
For Euplotes, no split rRNAs were detected using local sequence alignments of portions of the identified rRNA sequence (de Graaf et al. 2009), but no experimental support was provided for this conclusion.
Furthermore, while we can use the iterative approach (Fig. 1B) to improve the segmentation and alignment of each portion of the molecule, at most two iterations are enough to result the convergence of the solutions in practice (Table 2).
