Sentence examples for alignment pipeline from inspiring English sources

The genome alignments were constructed from syntenic pairwise alignments which were then multiply aligned using the UCSC/MULTIZ alignment pipeline (Kent et al. 2003; Blanchette et al. 2004).

Sequences retrieved from Blast searches were automatically integrated into the corresponding alignments and aligned using CLUSTALW, implemented in our in-house automated Blast and alignment pipeline.

Fig. 3 Alignment pipeline overview.

We evaluated both the pairwise registration and the complete multi-view alignment pipeline presented in Section "Pairwise alignment technique'' and SectionMulti-view alignment pipeline, respectively through a series of tests performed on the datasets presented in Section "Acquired datasets".

For the multi-view alignment pipeline, our aim is to progressively complete the object coverage with an unconstrained acquisition procedure.

To this end, we propose a reliable and fast feature-based multiple-view alignment pipeline that allows interactive registration of multiple views according to an unchained acquisition procedure.

Simplified, intuitive and rapid object modeling requires effective and automated alignment pipelines capable to trace back each independently acquired range image of the scanned object into a common reference system.

CM, JH, CJL and AA contributed to early versions of sequence alignment pipelines.

In traditional reference-based alignment pipelines, short reads from high-throughput sequencers are first mapped, and genetic variation is considered afterward.

Modifications to sequence alignment pipelines are also needed to extract the unaligned reads after mapping to the mouse reference and remap them to the human reference.

We used two RNA-seq alignment pipelines, TopHat [ 8] and a customized strategy using BFAST [ 19] as primary aligner and known splicing sites documented in UCSC Known Gene database [ 23].