Sentence examples for alignment parameters from inspiring English sources

All sequences were aligned with default BLAST alignment parameters to the UCD10X v1.0 pseudomolecules to identify the PUN1 sequence.

The sequences were aligned using Clustal Omega with default alignment parameters.

Sequences were aligned using ClustalX v2.0 [ 24] (pairwise alignment parameters: gap opening = 10.0, gap extend = 0.1; multiple alignment parameters: gap opening = 10.0, gap extend = 0.2).

BldB and Hpb amino acid sequences were aligned using ClustalW version 1.83 with default alignment parameters [ 31].

The GPCR sequences were aligned using ClustalX 2.0 [ 49] with default alignment parameters.

Sequences were aligned by using CLUSTAL W [ 127] with default multiple alignment parameters.

All datasets were aligned using CLUSTALW 1.82 [ 72] with default alignment parameters.

Using these alignment parameters, ~90% of the sequences generated from BTx623 aligned to the BTx623 sequenced genome.

Sequenced tags were aligned to the rat genome RN4 using BWA (version 0.5.9) using default alignment parameters [ 43].

Sequenced tags were aligned to the rat genome RN4 using BWA (version 0.5.9) with default alignment parameters [ 43].

Reads of BAC pool rP were aligned using Mosaik to GenomeZipper sequence dataset with the aim to optimize alignment parameters.