Sentence examples for alignment pair from inspiring English sources

The best alignment pair of merged fragments are kept.

For every such alignment pair, infer the fragment length.

Each alignment pair uniquely specifies a junction candidate: the new sequence that would exist in the sample DNA if two discontinuous regions of the reference genome were joined.

A junction candidate is defined by the endpoints of the first and second matches of the alignment pair to the reference sequence that are nearest the breakpoint (a2 and b1) and the directions each sequence extends away from the breakpoint in reference sequence coordinates (whether a2 >  a1 and whether b2 >  b1).

Others, i.e. Dali (Holm and Sander, 2000) and Matras (Kawabata and Nishikawa, 2000), whose results are among the ones in the highest agreement with the standard protein databases, allow distance distortions not controlled by a single transformation although the score for a single alignment pair depends on all others pairs.

Alignment of the unmapped contigs with each other revealed that there were five alignment pairs that were present in both strains; in total, 81.5kb were successfully aligned (Additional file 8).

The findings from our two studies suggest teaching scale information using structural, progressive, and hierarchical alignment paired with corrective feedback, is effective for the development of a linear representation of magnitude.

Taken together, the results from Experiments 1 and 2 provide evidence of the effect of spatial analogies using a structural, progressive, and hierarchical alignment paired with corrective feedback, as instantiated within each instructor's teaching style.

However, when aligning genomes which have undergone a significant amount of gene gain and loss, an excess of large gaps exists that does not fit the gap size distribution imposed by a standard global alignment pair-HMM [2].

An alignment E-Value depends on database size and composition, so it is impractical to define a universal cutoff, above which most data consists of random alignment pairs.

Based on the combined alignment, pair-wise nucleotide differences among all T. cancriformis haplotypes ranged from 1 to 137 bp which translate into a maximum distance (HKY + G corrected) of 14.38% (H5 vs. H17).