Sentence examples for alignment overlap with from inspiring English sources

Reads with no alignment overlap with other reads are denoted as singletons.

Pis1 has no close homolog of known structure, but gives a weak BLAST hit (E∼0.027) to the CDP-OH phosphotransferase domain of IPCT-DIPPS from Archaeoglobus fulgidus, which contains approximately 200 residues and six transmembrane α-helices (PDB ID 4MND; not shown in figure 5 because the domain structure has no alignment overlap with the sequence introduced by the frameshift) (Nogly et al. 2014).

When a trimmed, probe set consensus sequence alignment overlaps with one or more mRNAs in a group, the probe set is then considered to interrogate the same gene region or transcriptional unit as defined by the mRNAs' pattern of alignment.

Non-poly(A/T -tailed ESTs were used A/T -tailedng ESTsence for novel transcript variant expression if their chromosome alignment overlapped were poly(A/T)-tailed ESTs.

If the coordinates of two sets alignments overlapped with each other, only the alignment with the lower e value was retained.

We used the expectation value 1.0 × 10− as a cutoff and maintained at least 75% sequence similarity between the two sequences with a minimum alignment overlap 80%.

By using NCBI BLASTP program (version 2.2.17) [ 32, 33], orthologs for the S. cerevisiae and S. paradoxus proteins were identified by aligning the amino acid sequences of the proteins from S. cerevisiae with those of S. paradoxus fixing the expectation value cut-off at 1.00 × 10-5, atd at least 75% sequence similarity between the two sequences with a minimum alignment overlap of 80%.

Within Genlight, we defined orthologs as best reciprocal blastp hits with a minimum of 70% sequence alignment overlap and an E-value of 0.01 or smaller.

The sequence alignment overlap and the E-value cut off can be preset in accordance with the goal of the experiment [21], [29].

Second, within the first 16,026,800 bp (>10%) of the conMAC containing the largest, telomere-to-telomere assembled MAC chromosomes, we manually surveyed candidate IES positions implicated by L-only or R-only alignments for overlap with an exon of a predicted gene.

In this method, local alignment between a held out protein and the binding sites of the remaining proteins is performed and if the best scoring alignment overlaps (by at least 10 residues) with the known binding site in the held out protein, it is considered to be a true hit.