The phrase "alignment over a" is not complete and lacks context, making it difficult to determine its correctness and usability in written English.
It could potentially be used in discussions about priorities or strategies, but without additional context, its meaning is unclear.
Example: "We need to focus on alignment over a shared vision to ensure team cohesion."
Alternatives: "alignment regarding a" or "alignment on a".
It was found that the aftershocks were arranged with a north-south alignment over a length of 70 km and that was expected from an earthquake of such magnitude.
Second, we compare YAHA with BWA-SW in their ability to find the single best alignment over a range of read lengths and error rates.
To transmit an alignment over a 3-state Markov chain, we use an approach similar to the adaptive encoding method used by Wallace and Boulton (1969) over a multinomial (n-state) distribution.
A multiplicative alignment over a target column y j can be computed by adding, for each element on the row x i, the least common multiple between the maximum of the column and the discretized value l c m(m a x y j ), a ij ).
These include the FASTQ format and its various quality encoding systems [ 13], the SAM format for short read alignment over a reference genome/transcriptome [ 14], the standard genetic variant call format (VCF) [ 15] and the differences in genome coordinate systems used in major databases and annotation files [ 16].
Finally, the new repeats were blasted against the HSY and the corresponding X sequences using Standalone BLAST software (NCBI) and screened based on the following more stringent criteria: 1) at least a 50% alignment over a consensus sequence, 2) occurrence of at least 10 times, and 3) an aligned region with at least 100 bp and > 75% identity.
For template-based modeling, these advances allowed improvement in predicted structures relative to their initial template alignments over a wide range of target template homology.
Furthermore, it was found that the genomic prediction model using cpn60 UT gave similar results to whole-genome sequence alignments over a broad range of taxa, suggesting that this method may have general utility for screening isolates and predicting their taxonomic affiliations.
We exploited the property of gene adjacency conservation between related species to target in-depth sequence alignments over a short genomic interval.
In order to investigate the effects on an exemplary practical application, we tested the performance of GERP on simulated multiple sequence alignments over a realistic species tree (Materials and Methods).
Intuitively, this ratio measures the average quality of the alignment over aligned and non-aligned sites.
