Sequence read alignment performed with an alternative aligner, Bowtie, yielded identical alignments for the large majority of reads and indistinguishable results in all downstream analyses.
The proposed optical structure is simpler and easier for optical alignment, and provides an alternative way in improving and simplifying the QEPAS system for industrial applications.
Although this low-frequency heteroplasmy might be explained by sequencing or alignment artifacts, an intriguing alternative possibility is that gene conversion coupled with selection may be acting at this site to maintain a functional cytochrome b sequence.
Kinematic alignment was recently introduced as an alternative to conventional alignment techniques.
We argue here that next-generation phylogenomics should consider alignment-free methods as an alternative – but not the only one.
Alignment-free similarity measures offer an alternative to the alignment-based ones in that they are unaffected by such genetic processes.
Based on these observations, we present DOMAIN, an algorithm for domain-oriented alignment of interaction networks, that follows an alternative direct-edge-alignment paradigm.
Even after changes in alignment, Route 64 was still an alternative.
Sequence-structure alignment can be used as an alternative search strategy.
The reproducibility of the alignment approach was tested by performing the mapping step with BWA, an alternative alignment program [ 45].
In each case, the reads involved were realigned with the CB4856 genome using cross_match (P. Green, unpublished data), providing an alternative alignment method and a full Smith Waterman alignment of the read against the genome, and analyzed.
